Molecular Docking of Michelia alba Leaves Active Compounds Against Human Epidermal Growth Factor Receptor 2 (HER-2)

  • Felysia Isman Institut Teknologi Sepuluh Nopember
    (ID)
  • Paundra Pratama Institut Teknologi Sepuluh Nopember
    (ID)
  • Arif Fadlan Institut Teknologi Sepuluh Nopember
    (ID) http://orcid.org/0000-0002-6138-4015
Keywords: anticancer, Michelia alba, molecular docking, HER-2

Abstract

Breast cancer characterized by overexpression of the human epidermal growth factor receptor-2 (HER-2) and is a deadly disease worldwide. Chemotherapy with drugs targeting HER-2 is less effective and shows various drawbacks. This study aimed to study anticancer potential of active compounds contained in Michelia alba through molecular docking against HER-2. The molecular docking study was performed toward HER-2 receptor (PDB: 3PP0) containing 30Q native ligand with MCULE. The results showed that cis-linalool oxide, trans-linalool oxide, linalool, β-elemena, α-humulene, and nerolidol contained in M. alba leaves had lower docking scores than quercetin as control. Nerolidol showed the lowest docking score among all compounds. The active compounds in the leaves of M. alba have the potential as a HER-2 inhibitor in silico. 

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References

Ali, M., Sayem, S. A. J., Quah, Y., Lee, E. B., Birhanu, B. T., Suk, K. & Park, S. C. 2021. Investigation of potential antioxidants, thrombolytic and neuropharmacological activities of Homalomena aromatica leaves using experimental and in silico approaches. Molecules, 26(4), 975.

Alminderej, F., Bakari, S., Almundarij, T.I., Snoussi, M., Aouadi, K. & Kadri, A. 2020. Antioxidant activities of a new chemotype of Piper cubeba L. fruit essential oil (methyleugenol/eugenol): In Silico molecular docking and ADMET studies. Plants, 9(11), 1534.

Balavignesh, V., Srinivasan, E., Ramesh Babu, N. G. & Saravanan, N. 2013. Molecular docking study ON NS5B polymerase of hepatitis c virus by screening of volatile compounds from Acacia concinna and ADMET prediction. International Journal of Pharmaceutical Life Sciences, 4, 2548.

Bare, Y., S. M., Tiring, S. S. N. D., Sari, D. R. T. & Maulidi, A. 2020. Virtual Screening: Prediksi potensi 8-shogaol terhadap c-Jun N-Terminal Kinase (JNK). Jurnal Penelitian Dan Pengkajian Ilmu Pendidikan: E-Saintika, 4(1), 1.

Bhura, N., Gupta, J. & Gupta, P., 2019. Molecular docking studies of phytochemicals of basil against SIRT2 as an anti-breast cancer. Plant Archives, 19(2), 2185.

Brink, T. & Exner, T. E. 2009. Influence of Protonation, Tautomeric, and Stereoisomeric States on Protein−Ligand Docking Results - Journal of Chemical Information and Modeling. Journal of Chemical Information and Modeling, 49(6), 1535.

Chiang, H. M., Chen, H. C., Lin, T. J., Shih, I. C. & Wen, K. C. 2012. Michelia alba extract attenuates UVB-induced expression of matrix metalloproteinases via MAP kinase pathway in human dermal fibroblasts. Food and Chemical Toxicology, 50(12), 4260.

Chunqing, S., Yaoming, H., Chunhui, D. & Keji, K. 2002. Rapid determination of volatile constituents of Michelia alba flowers by gas chromatography–mass spectrometry with solid-phase microextraction. Journal of Chromatography A, 942, 283.

Devika, G. G. H. V. K. & Kv, R. 2021. Chemical constituents and their bioactivities of Zingiber nimmonii: An endemic species in South India. Journal of Medicinal and Aromatic Plant Sciences, 43(1-2), 15.

Elfiky, A. A., Mahdy, S. M. & Elshemey, W. M. 2017. Quantitative structure-activity relationship and molecular docking revealed a potency of anti-hepatitis C virus drugs against human corona viruses. Journal of Medicinal Virology, 89, 1040.

Escrivá-de-Romaní, S., Arumí, M., Bellet, M. & Saura, C. 2018. HER2-positive breast cancer: current and new therapeutic strategies. The Breast, 39, 80.

Farouk, A., Mohsen, M., Ali, H., Shaaban, H. & Albaridi, N. 2021. Antioxidant Activity and Molecular Docking Study of Volatile Constituents from Different Aromatic Lamiaceous Plants Cultivated in Madinah Monawara, Saudi Arabia. Molecules, 26(14), 4145.

Frodin, D. G. & Govaerts, R. 1996. World checklist and bibliography of Magnoliaceae. Kew, United Kingdom: Royal Botanic Gardens.

Hashemzaei, M., Far, A. D., Yari, A., Heravi, R. E., Tabrizian, K., Taghdisi, S. M., Sadegh, S. E., Tsarouhas, K., Kouretas, D., Tzanakakis, G., Nikitovic, D., Anisimov, N. Y., Spandidos, D. A., Tsatsakis, A. M. & Rezaee, R. 2017. Anticancer and apoptosis-inducing effects of quercetin in vitro and in vivo. Oncology Reports, 38(2), 819.

Haque, M. I., Khalipha, A. B. R., Sakib, M. R., Prottay, A. A. S., Islam, M. A., Zannat, R., Sardar, S. & Santa, N.Z. 2021. In-silico molecular docking study of linalool against 3ELJ for cell cycle arrest and apoptosis in HepG2 cells. International Journal of Evergreen Scientific Research Research Paper, 3(2), 105.

Huang, S. Y., Grinter, S. Z. & Zou, X. 2010. Scoring functions and their evaluation methods for protein-ligand docking: Recent advances and future directions. Physical Chemistry Chemical Physics, 12(40), 12899.

Kementerian Kesehatan RI. 2015. Pusat data dan informasi (Stop kanker). Jakarta Selatan.

Kiss, R., Sandor, M. & Szalal, F. A. 2012. http://Mcule.com: a public web service for drug discovery. Journal of Cheminformatics, 4, P17.

Khammee, T., Jaratrungtawee, A. & Kuno, M. 2018. Gas chromatography–mass spectrometry analysis, in vitro activities, and in silico molecular docking of major components of michelia alba dc essential oil and scented extracts. Gas, 11(12).

Krishnamurti, U. & Silverman, J. F. 2014. HER2 in breast cancer: a review and update. Advances in anatomic pathology, 21(2), 100.

Li, G. B., Yang, L. L., Wang, W. J., Li, L. L. & Yang, S. Y. 2013. ID-score: A new empirical scoring function based on a comprehensive set of descriptors related to protein-ligand interactions. Journal of Chemical Information and Modeling, 53(3), 592.

Li, J., Fu, A. & Zhang, L. 2019. An overview of scoring functions used for protein–ligand interactions in molecular docking. Interdisciplinary Sciences: Computational Life Sciences, 11(2), 320.

Li, N., Deng, Y., Zhou, L., Tian, T., Yang, S., Wu, W., Zheng, Y., Zhai, Z., Hao, Q., Song, D. & Zhang, D. 2019. Global burden of breast cancer and attributable risk factors in 195 countries and territories, from 1990 to 2017: results from the Global Burden of Disease Study 2017. Journal of Hematology & Oncology, 12(1), 140.

Liao, N. 2016. HER2-positive breast cancer, how far away from the cure? on the current situation of anti-HER2 therapy in breast cancer treatment and survival of patients. Chinese clinical oncology, 5(3), 41.

Lo, W. L., Wu, Y. C., Hsieh, T. J., Kuo, S. H., Lin, H. C. & Chen, C. Y. 2004. Chemical constituents from the stems of Michelia compressa. The Chinese Pharmaceutical Journal, 56, 69.

Loibl, S. & Gianni, L. 2017. HER2-positive breast cancer. The Lancet, 389(10087), 2415.

Maesaroh, S. & Ozel, C.A. 2021. Biotechnological approaches for the improvement of Magnolia genus grown in Indonesia. OKU Journal of Natural and Applied Sciences, 4(2), 186.

Maia, E. H. B., Assis, L. C., de Oliveira, T. A., da Silva, A. M. & Taranto, A. G. 2020. Structure-Based virtual screening: from classical to artificial intelligence. Frontiers in Chemistry, 8(343), 1.

Mavillapalli, R. C., Jayabalan, S. & Muthusamy, S., 2017. Molecular docking studies of phytoconstituents identified in cinnamomum verum and coriandrum sativum on HMG COA reducatse–an enzyme target for antihyperlipidemic activity. International Journal of Pharmaceutical Science & Research, 8, 4172.

Oh, D. Y. & Bang, Y. J. 2020. HER2-targeted therapies-a role beyond breast cancer. Nature Reviews Clinical Oncology, 17(1), 33.

Paarakh, P. 2017. In silico antidiabetic activity of linalool isolated from coriandrum sativum linn fruit. International Journal of Cancer Cellular Biology Research, 2(1), 29.

Pernas, S. & Tolaney, S. M. 2019. HER2-positive breast cancer: new therapeutic frontiers and overcoming resistance. Therapeutic advances in medical oncology, 11, 1758835919833519.

Pondé, N., Brandão, M., El-Hachem, G., Werbrouck, E. & Piccart, M. 2018. Treatment of advanced HER2-positive breast cancer: 2018 and beyond. Cancer treatment reviews, 67, 10.

Putra, I. M. H., Pratama, I. P. A. A. C., Putra, K. D. A., Pradnyaswari, G. D. & Laksmiani, N. P. L. 2022. The potency of alpha-humulene as HER-2 inhibitor by molecular docking. Pharmacy Reports, 2(1), 19.

Sakhteman, A., Pasdaran, A., Afifi, M. & Hamedi, A. 2020. An Assay on the Possible Effect of Essential Oil Constituents on Receptors Involved in Women’s Hormonal Health and Reproductive System Diseases. Journal of evidence-based integrative medicine, 25, 2515690X20932527.

Sanimah, S., Suri, R., Azizun, R. N., Hazniza, A., Radzali, M., Rusli, I. & Hassan, M. D. 2008. Volatile compounds of essential oil from different stages of Michelia alba (cempaka putih) flower development. Journal of Tropical Agriculture and Food Sciences, 36(1), 109.

Silva, A. P., Silva, N. F., Andrade, E. H. A., Graieri, T., Setzer, W. N., Maia, J. G. S. & Silva, J. K. R. 2017. Tyrosinase inhibitory activity, molecular docking studies and antioxidant potential of chemotypes of Lippia origanoides (Verbenaceae) essential oils. PLos One, 12(5), e0175598.

Singh, S. P., Nongalleima, K., Singh, N. I., Doley, P., Singh, C. B., Singh, T. R. & Sahoo, D. 2018. Zerumbone reduces proliferation of HCT116 colon cancer cells by inhibition of TNF-alpha. Scientific reports, 8(1), 1.

Shefrin, S., Manakadan, A. A. & Saranya, T. 2018. A Computational Study of Anticancer Activity of Curcumin Derivatives Using in silico Drug Designing and Molecular Docking Tools. Asian Journal of Chemistry, 30(6), 1335.

Songsamoe, S., Matan, N. & Matan, N. 2017. Antifungal activity of Michelia alba oil in the vapor phase and the synergistic effect of major essential oil components against Aspergillus flavus on brown rice. Food Control, 77, 150.

Sotto, A. D., Mancinelli, R., Gullì, M., Eufemi, M., Mammola, C. L., Mazzanti, G. & Giacomo, S. D. 2020. Chemopreventive potential of caryophyllane sesquiterpenes: An overview of preliminary evidence. Cancers, 12(10), 3034.

Swantara, I. M. D., Bawa, I. G. A. G., Suparta, D. N., Agustina, K. K. & Temaja, I. R. M. 2020. Identification Michelia alba barks extract using gas chromatography-mass spectrometry (GC-MS) and its antifungal properties to inhibit microbial growth. Biodiversitas. 21, 1541.

Tan, S. H. I., Abdullah, T. L. & Go, R. 2018. Effect of Plant growth regulators on cutting propagation of cempaka putih (Magnolia alba) and cempaka kuning (Magnolia champaca). Transaction of Malaysian Society Plant Physiology, 25, 124.

Ueyama, Y., Hashimoto, S., Nii, H. & Furukawa, K. 1992. The chemical composition of the flower oil and the leaf oil of Michelia alba D.C. Journal of Essential Oil Research, 4, 15.

Wang, H. -M., Chen, C. -Y., Chen, C. -Y., Ho, M. -L., Chou, Y. -T., Chang, H. -C., Lee, C. -H., Wang, C. -Z. & Chu, I-M. 2010. (-)-N-Formylanonaine from Michelia Alba as a humantyrosinase inhbitor and antioxidant. Bioorganic & Medicinal Chemistry, 18, 5241.

Zhang, M., Bai, X., Zeng, X., Liu, J., Liu, F. & Zhang, Z. 2021. circRNA-miRNA-mRNA in breast cancer. Clinica Chimica Acta, 523, 120.

Zhu, J., Li, B., Ji, Y., Zhu, L., Zhu, Y. & Zhao, H. 2019. β-elemene inhibits the generation of peritoneum effusion in pancreatic cancer via suppression of the HIF1A-VEGFA pathway based on network pharmacology. Oncology Reports, 42(6), 2561.

Published
2022-12-25
How to Cite
Isman, F., Pratama, P., & Fadlan, A. (2022). Molecular Docking of Michelia alba Leaves Active Compounds Against Human Epidermal Growth Factor Receptor 2 (HER-2). Al-Kimia, 10(2). https://doi.org/10.24252/al-kimia.v10i2.28437
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Article
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